PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G006100.1
Common NamePOPTR_0016s00780g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 198aa    MW: 21185.4 Da    PI: 6.0197
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G006100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.48.6e-5825120297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdr+lPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+k+re
  Potri.016G006100.1  25 REQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQKFRE 115
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  Potri.016G006100.1 116 MEGEK 120
                         ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-5421123IPR009072Histone-fold
SuperFamilySSF471137.14E-4127124IPR009072Histone-fold
PfamPF008081.2E-273094IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.4E-215876No hitNo description
PROSITE patternPS0068506177IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.4E-217795No hitNo description
PRINTSPR006152.4E-2196114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MADSDNESGE QNNSNTNYST ETSPREQDRL LPIANVSRIM KKALPANAKI SKDAKETVQE  60
CVSEFISFIT GEASDKCQRE KRKTINGDDL LWAMTTLGFE DYVEPLKIYL QKFREMEGEK  120
TAAMGIVRQG DQRDGTAGDG GVVNSGNPGG GFGGGGGGNM YVGMQSSMAM MGHHHYQHRH  180
PGNMYGPGGG ASSGRPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4825115292Transcription factor HapC (Eurofung)
4g92_B4e-4825115292Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.25790.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2101290.0AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323121.21e-147hypothetical protein POPTR_0016s00780g
SwissprotO233101e-71NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLB9IH151e-147B9IH15_POPTR; Uncharacterized protein
STRINGPOPTR_0016s00780.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.14e-72nuclear factor Y, subunit B3